dilimap.pp.qc_metrics

dilimap.pp.qc_metrics(adata)

Compute quality control (QC) metrics for gene expression data.

Parameters:

adata – An AnnData object containing gene expression data.

Returns:

Adds three QC metrics to adata.obs

• log_totalRNA: log10-transformed total RNA count per cell.

• pct_mtRNA: Percentage of mitochondrial RNA per cell.

• pct_rRNA: Percentage of ribosomal RNA per cell.